PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009752.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GATA
Protein Properties Length: 276aa    MW: 28537.9 Da    PI: 8.0002
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009752.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.91.9e-20157191135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C+nCgt++TplWR+gp+g+k+LCnaCG++++k+++
  Do009752.1 157 CANCGTSSTPLWRNGPRGPKSLCNACGIRFKKEER 191
                 ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.0E-20151203IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-14153195No hitNo description
Gene3DG3DSA:3.30.50.101.1E-17155191IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011413.929155187IPR000679Zinc finger, GATA-type
CDDcd002024.47E-14156188No hitNo description
PROSITE patternPS003440157182IPR000679Zinc finger, GATA-type
PfamPF003203.7E-18157191IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MLRHCSGSSH QSIAAAPLPA TMASTTFSLF FPVPKAQWPA AAADEAAAAA FDDDHSSITT  60
SPSSPSSSSS AGSVDCTLSL GTPSSRRATA EPTKRAAQPP AYPSVSAASA VSWDVAADQS  120
YYCCQGSKKP TAVTACAANK GTVARTDHDA LLMDRRCANC GTSSTPLWRN GPRGPKSLCN  180
ACGIRFKKEE RRAVATAMDQ QSACGYVAPR AHYGPATGKQ APGAVPYCGE GAFPCGGGDV  240
ADAEAPFLTW RLNVVAPAPA PAFAVWPEQT TLFQYN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9678501e-51EU967850.1 Zea mays clone 306547 GATA transcription factor 19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963570.11e-101PREDICTED: GATA transcription factor 19-like
TrEMBLK3Z7461e-100K3Z746_SETIT; Uncharacterized protein
STRINGSi022366m1e-100(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.13e-24GATA transcription factor 19